Book Chapter
Yuksel M, Gupta A, Kar K, Kalyanaraman S.  2010.  Contract-Switching for Managing Inter-Domain Dynamics. Next-Generation Internet Architectures and Protocols. :136-153.
Yuksel M, Gupta A, Kar K.  2010.  Dynamic Overlay Single-Domain Contracting for End-to-End Contract Switching. Performance Models and Risk Management in Communication Systems. 46:191-223.
Guclu H, Karabacak T, Yuksel M.  2011.  Network Modeling of Thin Film and Nanostructure Growth. Thin Film Growth: Physics, Materials Science and Applications. :384-403.
Erdin E, Klukovich E, Gunduz G, Gunes MH.  2015.  POSN: A Personal Online Social Network. ICT Systems Security and Privacy Protection. 455:51–66. Abstract
Conference Paper
Kocan F, Gunes MH.  2005.  Acyclic circuit partitioning for path delay fault emulation. The 3rd ACS/IEEE International Conference on Computer Systems and Applications. :22-. Abstract
Erdin E, Klukovich E, Gunes MH.  2015.  An Analysis of Friend Circles of Facebook Users. The 9th IEEE Workshop on Network Measurements (WNM). Abstract
Gunes MH, Sarac K.  2006.  Analytical IP Alias Resolution. ICC '06: IEEE International Conference on Communications. 1:459-464. Abstract
Mercan S, Ozkanli U, Gunes MH.  2013.  Analyzing Funding Network in Turkey. 2nd International Symposium on Computing in Informatics and Mathematics (ISCIM 2013).
Khan M, Yuksel M.  2015.  Autonomous Alignment of Free-Space-Optical Links Between UAVs. Proceedings of the 2nd International Workshop on Hot Topics in Wireless. :36–40.
Akgun MB, Gunes MH.  2013.  Bipartite Internet Topology at the Subnet-level. IEEE International Workshop on Network Science (NSW 2013). Abstract
Gunes MH, Evrenosoglu CY.  2010.  Blind processing: Securing data against system administrators. 2010 IEEE/IFIP Network Operations and Management Symposium Workshops. :304-311. Abstract
Kardes H, Gunes MH, Oz T.  2012.  Cheleby: A subnet-level internet topology mapping system. 2012 Fourth International Conference on Communication Systems and Networks (COMSNETS). :1-10. Abstract
Cheung DP, Gunes MH.  2012.  A Complex Network Analysis of the United States Air Transportation. ASONAM '12: Proceedings of the 2012 International Conference on Advances in Social Networks Analysis and Mining (ASONAM 2012). :699–701.