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Bilgi M, Yuksel M, Pala N.  2010.  3-D Optical Wireless Localization. IEEE GLOBECOM Workshop on Optical Wireless Communications (OWC). :1087-1091.
Kumari DR, Guclu H, Yuksel M.  2011.  Ad-hoc Limited Scale-Free Models for Unstructured Peer-to-Peer Networks. Peer-to-Peer Networking and Applications, Springer. 4(2):92-105.
Khan M, Yuksel M.  2015.  Autonomous Alignment of Free-Space-Optical Links Between UAVs. Proceedings of the 2nd International Workshop on Hot Topics in Wireless. :36–40.
Yuksel M, Gupta A, Kar K.  2010.  Dynamic Overlay Single-Domain Contracting for End-to-End Contract Switching. Performance Models and Risk Management in Communication Systems. 46:191-223.
Karaoglu HT, Yuksel M.  2011.  Effectiveness of Multi-Hop Negotiation on the Internet. IEEE Global Communications Conference (GLOBECOM). :1-6.
Karaoglu HT, Yuksel M.  2011.  Inter-domain Multi-Hop Negotiation for the Internet (poster paper). IEEE International Symposium on Policies for Distributed Systems and Networks (POLICY). :169-170.
Muthuswamy PK, Kar K, Gupta A, Yuksel M.  2012.  Inter-domain Traffic Engineering as Bi-level Network Flow Optimization. IFIP/IEEE Annual Conference on Information Sciences and Systems (CISS).
Muthuswamy PK, Kar K, Gupta A, Karaoglu HT, Yuksel M.  2012.  ISPs as Nodes or Sets of Links? IEEE International Conference on Communications (ICC).
Khan M, Yuksel M.  2014.  Maintaining a free-space-optical communication link between two autonomous mobiles. Wireless Communications and Networking Conference (WCNC), 2014 IEEE. :3154-3159.
Yuksel M.  2010.  Meta-Headers: Top-Down Networking Architecture with Application-Specific Constraints. IEEE GLOBECOM Workshop on Network of the Future (FutureNet-III). :309-314.
Karaoglu HT, Akgun MB, Gunes MH, Yuksel M.  2012.  Multi Path Considerations for Anonymized Routing: Challenges and Opportunities. 2012 5th International Conference on New Technologies, Mobility and Security (NTMS). :1-5. Abstract
Nakhkoob B, Bilgi M, Yuksel M, Hella M.  2009.  Multi-transceiver optical wireless spherical structures for MANETs. IEEE Journal on Selected Areas in Communications. 27(9):1612-1622. Abstract
Gonen B, Yuksel M.  2011.  Network Configuration and Management via Two-Phase Online Optimization. IEEE Global Communications Conference (GLOBECOM). :1-6.
Arslan E, Yuksel M, Gunes MH.  2013.  Network management game. SIGCOMM Computer Communication Review. 43:46–50. Abstract
Arslan E, Yuksel M, Gunes MH.  2011.  Network management game. 2011 18th IEEE Workshop on Local Metropolitan Area Networks (LANMAN). :1-6. Abstract
Arslan E.  2011.  Network Management Game. Computer Science and Engineering. MS
Guclu H, Karabacak T, Yuksel M.  2011.  Network Modeling of Thin Film and Nanostructure Growth. Thin Film Growth: Physics, Materials Science and Applications. :384-403.